PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001565.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 198aa    MW: 22383.8 Da    PI: 4.8071
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001565.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.81.1e-3681271128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ ++ +e ++wyf+s+r          +r+t++gyWka 
  Itr_sc001565.1_g00004.1   8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLEGRAMGEGNKWYFYSRRTA--------SRITSNGYWKAL 84 
                              79*************************999.99**************977778899******9854........799********* PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g d++++ + +g+ vg+k+  +fy g+ p+gekt+Wvm+eyrl
  Itr_sc001565.1_g00004.1  85 GGDEPIFPSsGGHRVGVKRCYAFYIGEPPQGEKTSWVMQEYRL 127
                              *******8868899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-494164IPR003441NAC domain
PROSITE profilePS5100546.3518166IPR003441NAC domain
PfamPF023654.2E-229127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGENSVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLEGRAMGE  60
GNKWYFYSRR TASRITSNGY WKALGGDEPI FPSSGGHRVG VKRCYAFYIG EPPQGEKTSW  120
VMQEYRLSAS PDSASASTTS AKSSSRRRTH SKNDYSKWVI CRVYDSNCDD DGDDGNELSC  180
LDEVFLSLDD LDEISLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D7e-40416716169NAC domain-containing protein 19
3swp_C7e-40416716169NAC domain-containing protein 19
3swp_B7e-40416716169NAC domain-containing protein 19
3swp_A7e-40416716169NAC domain-containing protein 19
3swm_D7e-40416716169NAC domain-containing protein 19
3swm_C7e-40416716169NAC domain-containing protein 19
3swm_B7e-40416716169NAC domain-containing protein 19
3swm_A7e-40416716169NAC domain-containing protein 19
4dul_B8e-40416713166NAC domain-containing protein 19
4dul_A8e-40416713166NAC domain-containing protein 19
1ut7_B8e-40416713166NO APICAL MERISTEM PROTEIN
1ut7_A8e-40416713166NO APICAL MERISTEM PROTEIN
1ut4_B8e-40416713166NO APICAL MERISTEM PROTEIN
1ut4_A8e-40416713166NO APICAL MERISTEM PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762857.11e-103PREDICTED: NAC transcription factor 25 isoform X1
RefseqXP_016458989.11e-103PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK61e-85NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A068TMB61e-103A0A068TMB6_COFCA; Uncharacterized protein
STRINGVIT_12s0055g00510.t011e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-68xylem NAC domain 1